DreEX6040410 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19425559-19437631:-
Coord C1 exon
chr16:19437518-19437631
Coord A exon
chr16:19434888-19435031
Coord C2 exon
chr16:19425559-19425741
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTTGATGTCTTTTAGGTA
3' ss Score
10.98
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTGGCTGCTATGCAAGCAGAGGTGTCCCGAAGACTAAAAGAATGTGAAAAGGATTTGGCTAAAGCTGAACCTGCTTTAGATGCAGCTACAGCTGCTCTCCAAACACTCAACAAG
Seq A exon
GTAAATCTGACAGAGTTAAAGACGTTCCCGAATCCCCCGGAGGCTGTGATTAACGTCACAGCGGCTGTGATGGTTCTTTTGGCTCCACGTGGGCAAATTCCTAAAGACCGGGGGTGGAAGGCTGCCAGAGTCTTCATGGGCAAG
Seq C2 exon
GTGGATGACTTTCTGCAGGCTCTTCTTTCTTACGATAAAGAGCACATCCCTCAGTCGTGTCTGAATGTGGTAAAGCAAGAATACCTTAAAAATCCAGAGTTTCATCCCGATCACGTCCGGACCAAGTCCTATGCAGCTGCAGGTCTCTGTGCCTGGATCATCAACATTGTGCGCTACTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'34-36,'34-35,35-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(10.7=100)
A:
PF127772=MT=FE(13.6=100)
C2:
PF127772=MT=FE(17.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGCAAGCAGAGGTGTCCC
R:
GCAGCTGCATAGGACTTGGTC
Band lengths:
247-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]