BtaEX0011569 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30670513-30674239:+
Coord C1 exon
chr4:30670513-30670575
Coord A exon
chr4:30673011-30673154
Coord C2 exon
chr4:30674057-30674239
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGCTTTTCTTCAGGTC
3' ss Score
11.91
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
GTGACAGCCATTCAGACTGAAGTGTCCCAGAAACAGAGGGAGTGTGAGGCAGACTTACTGAAA
Seq A exon
GTCAATCTCACTGAGCTGAAAGCCTTTCCCAACCCTCCAAATGCAGTCACCAATGTTACTGCGGCTGTGATGGTCCTTCTGGCTCCCCGGGGCAGAGTGCCGAAAGACCGGAGTTGGAAAGCAGCAAAAGTCTTCATGGGGAAG
Seq C2 exon
GTGGATGATTTTTTACAAGCGTTAATTAACTATGACAAAGAGCACATTCCAGAGAATTGTCTAAAAGTGGTGAAGGAACAGTATCTGAGAGACCCTGAGTTCAACCCAAACCTGATTCGGACCAAATCTTTTGCAGCAGCTGGTCTCTGCGCCTGGGTCATCAACATCATGAAATTCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078_MULTIEX1-1/8=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(10.7=100)
A:
PF127772=MT=FE(13.6=100)
C2:
PF127772=MT=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAGCCATTCAGACTGAAGT
R:
TAGAATTTCATGATGTTGATGACCCA
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development