RnoEX6030094 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145874695-145878347:-
Coord C1 exon
chr6:145878234-145878347
Coord A exon
chr6:145875530-145875673
Coord C2 exon
chr6:145874695-145874877
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTATAACTGCTTTGTTTCAGGTA
3' ss Score
8.9
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTGGCCGCCATTCAAACTGAAGCGTCCCAGAAGCAGAGGGAGTGCGAGGCTGACTTACTCAAGGCTGAGCCCGCCCTGGTCGCTGCTACAGCTGCACTCAATACACTCAACAGG
Seq A exon
GTAAACCTCACAGAACTGAAAACCTTCCCCAACCCCCCAAATGCTGTTACCAATGTAACTGCAGCTGTGATGGTCCTTCTGGCCCCCCGAGGCAGAGTGCCAAAAGACAGAAGTTGGAAAGCAGCCAGAATCTTCATGGGAAAG
Seq C2 exon
GTTGATGATTTCCTACAAGCGTTAATTAACTATGATAAAGAGCACATTCCAGAGAACTGTCTAAAAGTAGTAAATGAACAATATTTGAAAGATCCGGAGTTTAATCCAAACCTGATTCGGACCAAGTCTTTTGCAGCAGCTGGTCTCTGTGCCTGGGTCATCAACATCATTAAGTTTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'75-75,'75-74,76-75=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(10.7=100)
A:
PF127772=MT=FE(13.6=100)
C2:
PF127772=MT=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTGAAGCGTCCCAGAAGC
R:
AGCTGCTGCAAAAGACTTGGT
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]