HsaEX6007386 @ hg19
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:2942]
Coordinates
chr7:21824045-21827201:+
Coord C1 exon
chr7:21824045-21824158
Coord A exon
chr7:21826242-21826385
Coord C2 exon
chr7:21827019-21827201
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTGCTTTTCTTCAGGTC
3' ss Score
11.96
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
GTGACAGCCATTCAGACTGAAGTGTTCCAGAAACAGAGAGAATGTGAAGCTGACTTACTCAAGGCTGAGCCTGCACTGGTGGCTGCTACAGCTGCACTCAATACACTCAACAGG
Seq A exon
GTCAACCTCAGTGAGCTGAAAGCCTTTCCCAACCCTCCCATCGCAGTTACCAATGTTACTGCAGCCGTGATGGTCCTTCTGGCTCCTCGGGGAAGAGTGCCCAAAGACCGAAGTTGGAAAGCAGCTAAAGTCTTCATGGGAAAG
Seq C2 exon
GTTGATGATTTTTTGCAAGCATTAATTAACTATGACAAAGAGCACATTCCAGAGAACTGTCTAAAAGTGGTGAATGAACACTATTTGAAAGACCCAGAGTTTAATCCAAACCTGATTCGAACCAAATCTTTTGCAGCAGCTGGCCTGTGTGCCTGGGTCATCAACATCATTAAATTCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'65-65,'65-64,66-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(10.7=100)
A:
PF127772=MT=FE(13.6=100)
C2:
PF127772=MT=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTCAGACTGAAGTGTTCCA
R:
GCCAGCTGCTGCAAAAGATTT
Band lengths:
252-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)