DreEX6040442 @ danRer10
Exon Skipping
Gene
ENSDARG00000077384 | dnah11
Description
dynein, axonemal, heavy chain 11 [Source:ZFIN;Acc:ZDB-GENE-100922-8]
Coordinates
chr16:19551502-19554056:-
Coord C1 exon
chr16:19553661-19554056
Coord A exon
chr16:19553254-19553586
Coord C2 exon
chr16:19551502-19551756
Length
333 bp
Sequences
Splice sites
3' ss Seq
TTGCTGTTTCTTCTTCCTAGGAA
3' ss Score
10.78
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
AAACTTGGGAGCCTACATTTATTGGTGGAGTGGTACAATAAGGTGAAACAGACGACTCTTGAAGTGGAGGCTCCTCTTCTAAAAGAAGAGATGAAGACCATTGACCAGCAAATCCATCGAGCAGAAACTGAGCTTACATGGCAAACTGAGAACAGCTGGAACTACATCTGCATGCTTAAGCACACCGTCTATCAGCTGGAAAGAAGACTTCAGAAAACTAAAGACAACATTGAGATGATAAAAGCTCAGATGAAAGGATGGAGCAAACATCTGACATTTTGCAGAAAAGATCACAAGAAAGACATGGTACTACAACTAGAAGATAAAGCTACAATAGTAGCACAAAGTTACAGAAACATCAGGAAAGATGCAGAAATTATCCATAATTTGTTACAG
Seq A exon
GAAAACATAATGTTTTTTGAGGCCGATAGTTCATCAGATGAATGGAAAGCCTACTTGGAATATGTAGATGATATGGTGGTGGAAGGATTTTTCAAAGTGATCTCAACCTCTCTGGAGTTTTTCATTGAGAACATGGGGGGGTCAGTGAGGCAGGCTCCCTTGTTCGAGGCTCAGATGCTACTGATGGGATCTGAGATTCAATTCAAACCATCTCTTGATCGAGATGGTGGTGATGGACTTTATGAACTGGTGGAAGAATTACTTGGTGATGTGTTCAAGATGTCTGCTCAGGTCAAGAGAGTGGCACCACACCTCATTGTGGAGGACTACCAG
Seq C2 exon
GCAGATGTTGAGGACATGTTGGATCTCTTAGACCTTCGTCAGGAAATAATGGAGAAAGTTGAAGAAGTCCTGCAGAAAGCCTTACAATACCAGGACACATTTAACCGCTACAGCCCACTGTGGCTTGATGACAGGGCTGAATTTCTTAGGCAGTTCCTACTTTATGGTCATGTGCTGACAGCTGAAGAGGTGGAAGCCTATGGAGAGGATGCTTTTCCGGAAAACCCTCCAACCACAGCGCAATTCAAAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077384-'13-13,'13-12,14-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.141
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(9.6=42.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCACACCGTCTATCAGCTG
R:
CTGTCATCAAGCCACAGTGGG
Band lengths:
353-686
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]