DreEX6042690 @ danRer10
Exon Skipping
Gene
ENSDARG00000007727 | rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:ZFIN;Acc:ZDB-GENE-010131-1]
Coordinates
chr16:45426704-45427353:-
Coord C1 exon
chr16:45427270-45427353
Coord A exon
chr16:45427033-45427199
Coord C2 exon
chr16:45426704-45426757
Length
167 bp
Sequences
Splice sites
3' ss Seq
TCTTCACGGTTCTCTTCCAGTCT
3' ss Score
8
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
TCCACTGTGTCTGAAATGGAGGAGGACGGCATCATCTACACTGTGGTGGTGAAACAAGGTCCTGGTTCCCCCACCAGCCCTCAG
Seq A exon
TCTACAGCAGCCCGCTCTCAGCACGTCAAAGCCGGGACAGAGGAGAAGCTGGTCCTGCATCTCCTTCACTCCTTCTCCATGGGCGACTCATCCTTCATCTCCATCTTCCTCTCCACCTACCGCTCCTTCACCTCCACCCAGAGAGTGCTGGACATCCTCATATGCAG
Seq C2 exon
GTTGGAAAATCCTCCTGGGGAGTCTCACAGCAATAGCCGTCAGATGTTCAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007727-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.339 A=0.161 C2=0.342
Domain overlap (PFAM):
C1:
NO
A:
PF0061815=RasGEF_N=PU(49.5=85.7)
C2:
PF0061815=RasGEF_N=FE(18.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTGTGTCTGAAATGGAGG
R:
TTGTTGAACATCTGACGGCTA
Band lengths:
138-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]