BtaEX0030270 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016827 | RGL2
Description
Bos taurus ral guanine nucleotide dissociation stimulator-like 2 (RGL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075154]
Coordinates
chr23:7412576-7413275:-
Coord C1 exon
chr23:7413192-7413275
Coord A exon
chr23:7412756-7412934
Coord C2 exon
chr23:7412576-7412626
Length
179 bp
Sequences
Splice sites
3' ss Seq
TGGTGCTCTGTCTCCCCCAGGCC
3' ss Score
11.15
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
GCCCCTGTGTCTGTCTGGGAGGAGGAGGAGGATGGTGCTACCTTTACAGTCACAAGTCGCCAGTATCAGCCTCTTGATTCCTTG
Seq A exon
GCCCCAAGGCCTCCTCTGCGTTCCTCCCGGAAACTCCGAGCTGGCACCCTGGAGGCCCTGGTCAGACACCTGCTGGACGCCCGTACATCAGGGGCTGACATGACCTTCACAGCAGCCTTCTTGGCCACTCACCGGGCCTTCACCTCCACGCCTGCCCTGCTAGGGCTTATGGTTGACAG
Seq C2 exon
GCTGGAAGCTCTTGAATCTCATCCTGCTGATGAGCTAGAGAGGACAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016827-'5-5,'5-3,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.964 A=0.183 C2=0.278
Domain overlap (PFAM):
C1:
NO
A:
PF0061815=RasGEF_N=PU(50.0=81.7)
C2:
PF0061815=RasGEF_N=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTCTGTCTGGGAGGAGG
R:
CCTTTTGTCCTCTCTAGCTCATCA
Band lengths:
131-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development