RnoEX6061761 @ rn6
Exon Skipping
Gene
ENSRNOG00000000474 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:RGD Symbol;Acc:1302985]
Coordinates
chr20:5463864-5464519:-
Coord C1 exon
chr20:5464436-5464519
Coord A exon
chr20:5464020-5464198
Coord C2 exon
chr20:5463864-5463914
Length
179 bp
Sequences
Splice sites
3' ss Seq
ACACCCTCCATGTTCTCCAGGCC
3' ss Score
8.4
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
GCTTCTGTGTCAATCTGGGATGAGGAGGAGGATGGTGCGACCTTTACTGTCACAAGCCGCCAGTATAGGCCTCTTGATCCCTCG
Seq A exon
GCCCCCTTGCCTCCGCCTCGCTCCTCCCGAAGGCTCCGTGCTGGTACTCTGGAGGCCCTGGTCAGACACCTCTTGGATGCCAGGACATCAGGGGCTGACATGACGTTCACTCCAGCCTTGCTGGCCACCCACCGGGCCTTCACCTCCACTCCTGCCCTGTTTGGGCTTGTGGCTGACAG
Seq C2 exon
GCTGGAAGCCCTCGAATCGCATCCTCCGGGCGAGCTAGAGAGGACCACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000474-'6-7,'6-5,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.893 A=0.331 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
PF0061815=RasGEF_N=PU(50.0=81.7)
C2:
PF0061815=RasGEF_N=FE(17.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGTCAATCTGGGATGAGGA
R:
CCTGTGGTCCTCTCTAGCTCG
Band lengths:
132-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]