HsaEX6046616 @ hg19
Exon Skipping
Gene
ENSG00000237441 | RGL2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:HGNC Symbol;Acc:9769]
Coordinates
chr6:33264191-33264892:-
Coord C1 exon
chr6:33264809-33264892
Coord A exon
chr6:33264375-33264553
Coord C2 exon
chr6:33264191-33264241
Length
179 bp
Sequences
Splice sites
3' ss Seq
CATCTCTCTGTGTTCTCCAGGTC
3' ss Score
11.37
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GCCCCTGTGTCCGTCTGGGATGAGGAGGAGGATGGTGCCGTGTTTACCGTCACAAGCCGCCAATATCGACCTCTTGATCCCTTG
Seq A exon
GTCCCTATGCCTCCCCCACGTTCCTCCCGACGGCTCCGAGCTGGCACTCTGGAGGCCCTGGTCAGACACCTACTGGATACCCGGACATCAGGGACTGATGTGAGCTTCATGTCAGCCTTCCTGGCTACCCACCGGGCCTTCACCTCCACGCCTGCCTTGCTAGGGCTTATGGCTGACAG
Seq C2 exon
GCTGGAAGCCCTTGAATCTCATCCTACCGACGAACTAGAGAGGACAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237441-'4-11,'4-10,5-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=0.280 C2=0.675
Domain overlap (PFAM):
C1:
NO
A:
PF0061815=RasGEF_N=PU(87.5=81.7)
C2:
PF0061815=RasGEF_N=FE(17.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTGTGTCCGTCTGGG
R:
TTGTCCTCTCTAGTTCGTCGGT
Band lengths:
130-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)