HsaEX6046616 @ hg38
Exon Skipping
Gene
ENSG00000237441 | RGL2
Description
ral guanine nucleotide dissociation stimulator like 2 [Source:HGNC Symbol;Acc:HGNC:9769]
Coordinates
chr6:33296414-33297103:-
Coord C1 exon
chr6:33297032-33297103
Coord A exon
chr6:33296678-33296776
Coord C2 exon
chr6:33296414-33296464
Length
99 bp
Sequences
Splice sites
3' ss Seq
CATCTCTCTGTGTTCTCCAGGTC
3' ss Score
11.37
5' ss Seq
GATGTGAGC
5' ss Score
4.72
Exon sequences
Seq C1 exon
GTCTGGGATGAGGAGGAGGATGGTGCCGTGTTTACCGTCACAAGCCGCCAATATCGACCTCTTGATCCCTTG
Seq A exon
GTCCCTATGCCTCCCCCACGTTCCTCCCGACGGCTCCGAGCTGGCACTCTGGAGGCCCTGGTCAGACACCTACTGGATACCCGGACATCAGGGACTGAT
Seq C2 exon
GCTGGAAGCCCTTGAATCTCATCCTACCGACGAACTAGAGAGGACAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237441-'9-13,'9-12,10-13
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=0.283 C2=0.590
Domain overlap (PFAM):
C1:
NO
A:
PF0061815=RasGEF_N=PU(87.5=81.7)
C2:
PF0061815=RasGEF_N=FE(17.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGGATGAGGAGGAGGAT
R:
TTGTCCTCTCTAGTTCGTCGGT
Band lengths:
119-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains