DreEX6043552 @ danRer10
Exon Skipping
Gene
ENSDARG00000010425 | scara5
Description
scavenger receptor class A, member 5 (putative) [Source:ZFIN;Acc:ZDB-GENE-041210-258]
Coordinates
chr20:1339524-1347304:-
Coord C1 exon
chr20:1347224-1347304
Coord A exon
chr20:1344658-1344765
Coord C2 exon
chr20:1339524-1339589
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTGTTTGGGTAAGGCT
3' ss Score
2.83
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
GACCACCAGGGCCGAAGGGTGAGAAGGGTGATGTTGGACCCCTGGGACCAGACGGTATTCCGGGTTGGATTGGACCAAGAG
Seq A exon
GCTTGACTGGAGAAAAGGGCGTTCAGGGTCCTCGTGGACTGGCAGGACGAAACGGGCAGGATGGACACAATGGAGATAAAGGAGAGGTCGGCCCTGAGGGACCTAAAG
Seq C2 exon
GCGTAAGAGGAGAACGAGGACCGAAAGGAGAGAAGGGAGAGCGGGGAGACAAACAAGGAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010425-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(49.1=100),PF0139113=Collagen=PU(4.8=10.7)
A:
PF0139113=Collagen=PD(45.5=67.6),PF0139113=Collagen=FE(57.1=100)
C2:
PF0139113=Collagen=FE(34.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCACCAGGGCCGAAGG
R:
TTTTTCTCCTTGTTTGTCTCCCCG
Band lengths:
146-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]