GgaEX6032582 @ galGal4
Exon Skipping
Gene
ENSGALG00000016580 | SCARA5
Description
scavenger receptor class A, member 5 [Source:HGNC Symbol;Acc:HGNC:28701]
Coordinates
chr3:104771228-104775625:+
Coord C1 exon
chr3:104771228-104771308
Coord A exon
chr3:104772259-104772357
Coord C2 exon
chr3:104775566-104775625
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTGTCCTTGCTCCAGGGA
3' ss Score
9.28
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGCCCCCAGGACCCAAGGGAGACCCGGGCCATGAAGGGATGGAGGGGGAGCCTGGCCGGCCTGGCCCACCCGGCCTGCGAG
Seq A exon
GGATGCCTGGGGAGAGAGGACTACCAGGACCACGTGGCTTGAAGGGGGACAAAGGAGACTTTGGCCCTATGGGCCCTGCCGGGATGCGGGGATTCAAAG
Seq C2 exon
GTGATCGAGGACCAAAGGGAGAGAAGGGGGACCGAGGCAGTGACATGGGTGAGTGTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016580-'5-13,'5-12,6-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.857
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(51.9=100),PF0139113=Collagen=PU(12.1=25.0)
A:
PF0139113=Collagen=PD(42.3=64.7),PF0139113=Collagen=FE(56.9=100)
C2:
PF0139113=Collagen=PD(29.3=81.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGGACCCAAGGGAG
R:
AACACTCACCCATGTCACTGC
Band lengths:
135-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]