HsaEX0056416 @ hg19
Exon Skipping
Gene
ENSG00000168079 | SCARA5
Description
scavenger receptor class A, member 5 (putative) [Source:HGNC Symbol;Acc:28701]
Coordinates
chr8:27762295-27767260:-
Coord C1 exon
chr8:27767180-27767260
Coord A exon
chr8:27764665-27764763
Coord C2 exon
chr8:27762295-27762351
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTGTTTTCTCCCCAGGTC
3' ss Score
13.85
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GGCCACCGGGACCCAAAGGTGATCAGGGGGATGAAGGAAAGGAAGGCAGGCCTGGCATCCCTGGATTGCCTGGACTTCGAG
Seq A exon
GTCTGCCCGGGGAGAGAGGTACCCCAGGATTGCCCGGGCCCAAGGGCGATGATGGGAAGCTGGGGGCCACAGGACCAATGGGCATGCGTGGGTTCAAAG
Seq C2 exon
GTGACCGAGGCCCAAAAGGAGAGAAAGGAGAGAAAGGAGACAGAGCTGGGGATGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168079-'5-8,'5-7,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=1.000 C2=0.968
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(48.2=100),PF0139113=Collagen=PU(11.5=25.0)
A:
PF0139113=Collagen=PD(46.4=76.5),PF0139113=Collagen=FE(54.1=100)
C2:
PF0139113=Collagen=FE(31.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAAGGTGATCAGGGGGAT
R:
TGGCATCCCCAGCTCTGTC
Band lengths:
127-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)