BtaEX0031491 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019636 | SCARA5
Description
Bos taurus scavenger receptor class A, member 5 (putative) (SCARA5), mRNA. [Source:RefSeq mRNA;Acc:NM_001102499]
Coordinates
chr8:10754284-10759091:+
Coord C1 exon
chr8:10754284-10754364
Coord A exon
chr8:10757095-10757193
Coord C2 exon
chr8:10759035-10759091
Length
99 bp
Sequences
Splice sites
3' ss Seq
AACTTTCTTGTCTCCCCTAGGTC
3' ss Score
11.96
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GACCACCGGGCCCCAAAGGTGATCCGGGGGATGCAGGGAAAGAAGGCGAGCCTGGAATCCCTGGACTACCTGGACTTCGAG
Seq A exon
GTCTGCCAGGGGAGAGAGGGACCCCAGGACTGCCCGGCCCCAAGGGTGATGAAGGGAAGCTGGGAGCTACTGGGCCAATGGGCATGCGTGGCTTCAAAG
Seq C2 exon
GTGATCGAGGCCCAAAAGGGGAGAAAGGAGAGAAAGGAGACAGAACAGTGGATGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019636_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.564 A=0.627 C2=0.846
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(50.0=100),PF0139113=Collagen=PU(14.5=32.1)
A:
PF0139113=Collagen=PD(44.4=70.6),PF0139113=Collagen=FE(53.2=100)
C2:
PF0139113=Collagen=FE(30.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAAAGGTGATCCGGGG
R:
GGCATCCACTGTTCTGTCTCC
Band lengths:
127-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development