RnoEX0078355 @ rn6
Exon Skipping
Gene
ENSRNOG00000014398 | Scara5
Description
scavenger receptor class A, member 5 [Source:RGD Symbol;Acc:1306539]
Coordinates
chr15:49149705-49153513:+
Coord C1 exon
chr15:49149705-49149785
Coord A exon
chr15:49151581-49151679
Coord C2 exon
chr15:49153466-49153513
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTGTTCTCACCCCAGGTC
3' ss Score
9.83
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GACCACCAGGACCCAAAGGTGACCAAGGGAATGAAGGGAAGGAGGGAAAGCCAGGTAGCCCTGGACTTCCTGGATCTCGAG
Seq A exon
GTCTGCCAGGAGAGAGAGGTGACCCAGGAATGCCTGGTCCTAAGGGTGATGATGGGAAGCTAGGAGCCACAGGTCCCATGGGCATGCGCGGATTCAAAG
Seq C2 exon
GTGAGAGAGGCCCAAAGGGAGAGAAAGGAGAAAGAGGAGAGAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014398-'9-8,'9-7,10-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(33.3=100)
A:
PF0139113=Collagen=FE(40.7=100)
C2:
PF0139113=Collagen=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCACCAGGACCCAAAGG
R:
CAGCTCTCTCTCCTCTTTCTCCT
Band lengths:
129-228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]