MmuEX6042156 @ mm9
Exon Skipping
Gene
ENSMUSG00000022032 | Scara5
Description
scavenger receptor class A, member 5 (putative) [Source:MGI Symbol;Acc:MGI:1918395]
Coordinates
chr14:66357261-66361016:+
Coord C1 exon
chr14:66357261-66357341
Coord A exon
chr14:66359127-66359225
Coord C2 exon
chr14:66360969-66361016
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTGTGTCTTCTCTCCCCAGGTC
3' ss Score
13.51
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GGCCACCGGGACCCAAAGGTGACCAAGGAAATGAAGGGAAGGAGGGAAAGCCAGGTAGCCCTGGACTTCCTGGATCTCGAG
Seq A exon
GTCTGCCAGGAGAGAGAGGTGACCCAGGACTGCCTGGTCCCAAGGGTGATGATGGGAAGCTAGGGGCTACGGGCCCCATGGGCATGCGCGGATTCAAAG
Seq C2 exon
GTGATCGAGGCCCAAAAGGAGAGAAAGGAGAGAGAGGAGAGAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022032-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(50.0=100),PF0139113=Collagen=PU(10.5=21.4)
A:
PF0139113=Collagen=PD(44.4=70.6),PF0139113=Collagen=FE(57.9=100)
C2:
PF0139113=Collagen=FE(28.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGACCAAGGAAATGAAGGG
R:
AGCTCTCTCTCCTCTCTCTCCT
Band lengths:
112-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: