DreEX6044270 @ danRer10
Exon Skipping
Gene
ENSDARG00000057583 | prrc2c
Description
proline-rich coiled-coil 2C [Source:ZFIN;Acc:ZDB-GENE-081104-156]
Coordinates
chr20:15143629-15147389:-
Coord C1 exon
chr20:15147138-15147389
Coord A exon
chr20:15143818-15143910
Coord C2 exon
chr20:15143629-15143730
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGTGCCTTTTTATTGTGCAGGAG
3' ss Score
9.95
5' ss Seq
CCTGTTAGT
5' ss Score
-5.28
Exon sequences
Seq C1 exon
TTACCTGACATTCCTCCTCCAGAGCACAAGGAATATAAACCAGGTCCCATAGGTAAAGAGCGTTCGCTCAAGAACCGTAAGGCTGCCAAAGATGTGCGTCAGTCTGATGGAGAAGGCTTGGATAACAGTGGAACTGGAGCCAGTCGAGACCGAGACTCCAGCTCACCCGCTAAAGACAAAGTTCCTGAGCTCGGTGGAGACATTGAAGGCATGATCACTGCTCCTGCAGCAGAGTACTCCAGCAGCTCTAAG
Seq A exon
GAGTCTGTGACTGACTACACAGTCCCGTCGTCCTCTTTAGCTGACAACGTCCCCACTGCAGGAACCAAGATGGAGGAGAGTCTTGTGTCACCT
Seq C2 exon
GTGGCCCTCCCGCACCCATTGCCTATTCAAAGAAGAGAAGCCCTGCAGCAGAGCTCCAGTCTTGCTACAGTCTCTCCTGCCACCGTTGACCTCACACTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057583-'21-28,'21-27,23-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.971
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCACCCGCTAAAGACAA
R:
TGGCAGGAGAGACTGTAGCAA
Band lengths:
176-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]