GgaEX0004290 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:4866677-4877726:-
Coord C1 exon
chr8:4877475-4877726
Coord A exon
chr8:4868466-4868552
Coord C2 exon
chr8:4866677-4866778
Length
87 bp
Sequences
Splice sites
3' ss Seq
GGAATTATTTTTCTTCACAGGAG
3' ss Score
6.7
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
CTTCCAGACTTGAGTCCAGTAGAAAACAAAGAGTATAAACCCGGTCCTATTGGGAAAGAACGTTCTTTAAAGAACAGAAAGGTGAAGGATGCCCAACAGGGAGAGCCTGAGGGACAGGAGAAGTCATCTCCCACTTCTGTGAGAAGTCCAGAACCTGTCACTGCAAAGGAAACCAAAGCAGCAAGTGAACTGAGTACAGAAATAGGAACAATGATATCTGTGTCTGCTCCAGAGTTCGGAACAAGCACAAAG
Seq A exon
GAGTCTGTAACAGACTACACTACACCTTCTCATCCTAACACAGTGGCTACTAGCAGTACAAAAATGGAGGAGACTTTGGTGACGAAC
Seq C2 exon
GTGCCCCTGCCCCACACCCTTCCCCTCCCTAGGAGGGAGACTCTACAACAGAGCTCCAGCCTAACTCCAGTTTCTCCCGCTACCGTCGACCTCACCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003290-'44-52,'44-51,46-52
Average complexity
C2
Mappability confidence:
78%=80=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCAGAACCTGTCACTGCA
R:
CTGGAGTTAGGCTGGAGCTCT
Band lengths:
178-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]