GgaEX0004291 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:4860879-4868552:-
Coord C1 exon
chr8:4868466-4868552
Coord A exon
chr8:4866677-4866778
Coord C2 exon
chr8:4860879-4861092
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTGCCTGCCTTTCAGGTG
3' ss Score
10.49
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAGTCTGTAACAGACTACACTACACCTTCTCATCCTAACACAGTGGCTACTAGCAGTACAAAAATGGAGGAGACTTTGGTGACGAAC
Seq A exon
GTGCCCCTGCCCCACACCCTTCCCCTCCCTAGGAGGGAGACTCTACAACAGAGCTCCAGCCTAACTCCAGTTTCTCCCGCTACCGTCGACCTCACCCTCAAG
Seq C2 exon
ATGGAGTCCGCACGCAAAGCATGGGAGAATTCCCCAAACATGGGGGAGAAGAGTTCACCAGTGACCTCAGCAGCATCTCCCATAGCTGGTGGCAGCAGCAGCAACAGCAGCAGCAGCAACGCTGTGCCAAGCAGTGGTACTTACAGCTCCTTCTCTAGTGCATCAATGCCTCCTATTCCTGTGGCTTCAGTTACACCAACTACTTCACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003290-'46-53,'46-52,47-53
Average complexity
C2
Mappability confidence:
75%=75=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.875
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCTCATCCTAACACAGTGGC
R:
AGCCACAGGAATAGGAGGCAT
Band lengths:
249-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]