GgaEX0004291 @ galGal4
Exon Skipping
Gene
ENSGALG00000003290 | PRRC2C
Description
proline-rich coiled-coil 2C [Source:HGNC Symbol;Acc:HGNC:24903]
Coordinates
chr8:4729254-4735264:-
Coord C1 exon
chr8:4735164-4735264
Coord A exon
chr8:4733375-4733476
Coord C2 exon
chr8:4729254-4729354
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTGCCTGCCTTTCAGGTG
3' ss Score
10.49
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATTTTTCTTCACAGGAGTCTGTAACAGACTACACTACACCTTCTCATCCTAACACAGTGGCTACTAGCAGTACAAAAATGGAGGAGACTTTGGTGACGAAC
Seq A exon
GTGCCCCTGCCCCACACCCTTCCCCTCCCTAGGAGGGAGACTCTACAACAGAGCTCCAGCCTAACTCCAGTTTCTCCCGCTACCGTCGACCTCACCCTCAAG
Seq C2 exon
ATGGAGTCCGCACGCAAAGCATGGGAGAATTCCCCAAACATGGGGGAGAAGAGTTCACCAGTGACCTCAGCAGCATCTCCCATAGCTGGTGGCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003290-'35-33,'35-32,36-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTAACAGACTACACTACACCT
R:
AGCTATGGGAGATGCTGCTGA
Band lengths:
171-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]