DreEX6044271 @ danRer10
Exon Skipping
Gene
ENSDARG00000057583 | prrc2c
Description
proline-rich coiled-coil 2C [Source:ZFIN;Acc:ZDB-GENE-081104-156]
Coordinates
chr20:15141592-15143910:-
Coord C1 exon
chr20:15143818-15143910
Coord A exon
chr20:15143629-15143730
Coord C2 exon
chr20:15141592-15141778
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTCCTGGTTGTTGATTCAGGTG
3' ss Score
8.75
5' ss Seq
AAAGTACGA
5' ss Score
4.65
Exon sequences
Seq C1 exon
GAGTCTGTGACTGACTACACAGTCCCGTCGTCCTCTTTAGCTGACAACGTCCCCACTGCAGGAACCAAGATGGAGGAGAGTCTTGTGTCACCT
Seq A exon
GTGGCCCTCCCGCACCCATTGCCTATTCAAAGAAGAGAAGCCCTGCAGCAGAGCTCCAGTCTTGCTACAGTCTCTCCTGCCACCGTTGACCTCACACTCAAA
Seq C2 exon
ATGGAATCGGCAAGGAAGGCTTGGGAAAACTCACCCAGTCTGGTTGAAAAGAGCTCTCCTGTCACCTCCTCTGCTTCCCCCATCACCAGTGGAGGAGGAGCAGGCAGTGCCCCCTTCAACTCCTTCTCCAGTGCTTCAGTGCCACAGATACCTGTGGCCTCTGTCACCCCCAGCACCTCCCTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057583-'23-29,'23-28,25-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.971 C2=0.738
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCCCGTCGTCCTCTTTA
R:
GGTGACAGAGGCCACAGGTAT
Band lengths:
243-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]