HsaEX0007659 @ hg19
Exon Skipping
Gene
ENSG00000117523 | BAT2D1
Description
proline-rich coiled-coil 2C [Source:HGNC Symbol;Acc:24903]
Coordinates
chr1:171537386-171544267:+
Coord C1 exon
chr1:171537386-171537478
Coord A exon
chr1:171540459-171540560
Coord C2 exon
chr1:171544066-171544267
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTGTTGCCTACCTTTTCAGGTG
3' ss Score
11.46
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAGTCTGTAACAGACTATACTACACCCTCTTCTTCTTTGCCTAACACCGTGGCTACTAATAATACAAAGATGGAGGATACTTTGGTTAATAAT
Seq A exon
GTGCCCCTGCCCAACACCCTTCCCCTCCCTAAGAGGGAGACTATACAACAGAGCTCCAGCCTAACTTCAGTTCCTCCCACTACTTTCAGCCTCACCTTCAAG
Seq C2 exon
ATGGAGTCTGCACGCAAAGCATGGGAGAATTCTCCAAATGTAAGGGAAAAGGGGTCTCCAGTAACTTCCACAGCACCTCCAATTGCAACTGGAGTCAGCAGTAGTGCCAGTGGACCAAGCACTGCTAATTACAATTCGTTCTCAAGTGCATCCATGCCCCAGATTCCTGTTGCTTCAGTCACTCCTACAGCATCACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117523_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.893 C2=0.798
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTAACACCGTGGCTACTA
R:
AGGAGTGACTGAAGCAACAGG
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)