MmuEX0037415 @ mm10
Exon Skipping
Gene
ENSMUSG00000040225 | Prrc2c
Description
proline-rich coiled-coil 2C [Source:MGI Symbol;Acc:MGI:1913754]
Coordinates
chr1:162684055-162691233:-
Coord C1 exon
chr1:162691141-162691233
Coord A exon
chr1:162688116-162688217
Coord C2 exon
chr1:162684055-162684256
Length
102 bp
Sequences
Splice sites
3' ss Seq
TATGTTGCCTGCCTTTTCAGGTG
3' ss Score
11.46
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAGTCTGTAACAGACTACACCACACCTTCCTCTTCTCTGCCTAACACTGTGGCTACTAATAATGCAAAGATGGAGGATACTTTAGTTAATAAT
Seq A exon
GTGCCCCTGCCCAACACCCTTCCCCTCCCTAAGAGGGAGACTATACAACAAAGCTCCAGCCTAACTTCAGTTCCTCCCACTACTTTCAGCCTCACCTTTAAG
Seq C2 exon
ATGGAGTCTGCACGGAAGGCATGGGAGAATTCTCCAAATCTACGAGAAAAGGGGTCCCCAGTAACTTCTACAGCACCTCCCATTGTGAGCGGAGTCAGCAGCAGTGCCAGTGGACCAAGCACTGCTAATTACAGCTCCTTTTCCAGTGCATCAATGCCGCAGATCCCAGTTGCGTCAGTCACTCCTACAGCATCACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040225_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.995 A=0.773 C2=0.721
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGCCTAACACTGTGGCT
R:
GTGACTGACGCAACTGGGATC
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types