MmuEX0037414 @ mm9
Exon Skipping
Gene
ENSMUSG00000040225 | Prrc2c
Description
proline-rich coiled-coil 2C [Source:MGI Symbol;Acc:MGI:1913754]
Coordinates
chr1:164614186-164622755:-
Coord C1 exon
chr1:164622504-164622755
Coord A exon
chr1:164621272-164621364
Coord C2 exon
chr1:164614186-164614387
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTACTCCTCCACAGGAG
3' ss Score
10.52
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
CTTCCAGACTTGAGTCTGGTAGAAAACAAAGAACATAAACCTGGTCCCATTGGAAAGGAACGATCATTAAAAAATAGAAAAGTGAAAGATGCCCAGCAGGTCGAGCCAGAAGGACAAGAGAAACCCAGCCCAGCTGTGGTCAGAAGCACTGATCCTGAAACAGCAAAAGAAACCAAAGCAGTCTCCGAAATGTCTGCTGAAATTGGGGCGATGATCTCAGTCTCCTCTGCAGAGTATGGCTCTGATGCAAAG
Seq A exon
GAGTCTGTAACAGACTACACCACACCTTCCTCTTCTCTGCCTAACACTGTGGCTACTAATAATGCAAAGATGGAGGATACTTTAGTTAATAAT
Seq C2 exon
ATGGAGTCTGCACGGAAGGCATGGGAGAATTCTCCAAATCTACGAGAAAAGGGGTCCCCAGTAACTTCTACAGCACCTCCCATTGTGAGCGGAGTCAGCAGCAGTGCCAGTGGACCAAGCACTGCTAATTACAGCTCCTTTTCCAGTGCATCAATGCCGCAGATCCCAGTTGCGTCAGTCACTCCTACAGCATCACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040225_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.706
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGAGAAACCCAGCCCAG
R:
AATTCTCCCATGCCTTCCGTG
Band lengths:
171-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: