DreEX6046445 @ danRer10
Exon Skipping
Gene
ENSDARG00000016464 | si:ch211-89p3.3
Description
si:ch211-89p3.3 [Source:ZFIN;Acc:ZDB-GENE-041014-372]
Coordinates
chr20:35288086-35289200:+
Coord C1 exon
chr20:35288086-35288378
Coord A exon
chr20:35288716-35289010
Coord C2 exon
chr20:35289103-35289200
Length
295 bp
Sequences
Splice sites
3' ss Seq
GCTCTTTTTTTGTATCTCAGGCT
3' ss Score
7.79
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
AAATCATTCGTGTGGGTGATGTCAAGAAGGTGCATCATGTAGAACTGATGCCCACGGAGCACATACTGGCCGTCATCTCGGGCAGGAACCGACAAGTATGTCTGGTCTCCATGGCGGGTCTCGACGGGAGGGAGGTCGACAAGAATAAGGTGGCAGATACTAAAAACTGCCAGTTGCTGGTGTCCGGTGTGGTTCGCAATGTCACCTGCTTCTGCCTCGCCATTAAACGGCAGATCTCATGCTTCGAAATTAACAAGAGCAAGTCACGACACTCCCATCTCGTGGACATACAA
Seq A exon
GCTCCAGGAACTGTCCAATGGATGGCGCTGTTCAACCAGCAGTTGTGTGTTGGTTACCCATCAGGCTTCATGCGCTACAGTTTGTATGGAGAAACACCTCCAGCCAGCTTACTTCATCCAGATGACCCCACACTGGCATTTATTAAAACAGACAACCTGGATGCCCTTTGTGCTGTGGAAATCTCCAATAAGGAACTGCTGCTCTGCTTCAGTAAAATAGCAGTGTATGTTGACACACACGGCAGACGCTCGCGCCAGCAGGAGCTGATGTGGCCCGCGGCGCCCACCGCCTGCT
Seq C2 exon
GCTATAACGCCCCCTATCTGTCGGTCTACAGTGAAAATGCAGTGGATGTGTTTGATGTGAACTCTACGGAATGGATTCAGACCATTCCTCTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016464-'35-37,'35-36,36-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(36.9=100)
A:
PF0078017=CNH=FE(37.3=100)
C2:
PF0078017=CNH=FE(12.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGATGTCAAGAAGGTGCA
R:
CCGACAGATAGGGGGCGTTAT
Band lengths:
304-599
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]