DreEX6046446 @ danRer10
Exon Skipping
Gene
ENSDARG00000016464 | si:ch211-89p3.3
Description
si:ch211-89p3.3 [Source:ZFIN;Acc:ZDB-GENE-041014-372]
Coordinates
chr20:35286119-35289010:+
Coord C1 exon
chr20:35286119-35286181
Coord A exon
chr20:35288086-35288378
Coord C2 exon
chr20:35288716-35289010
Length
293 bp
Sequences
Splice sites
3' ss Seq
ATCTTTGCTCTTTCTTCCAGAAA
3' ss Score
11.02
5' ss Seq
CAAGTACAG
5' ss Score
0.24
Exon sequences
Seq C1 exon
ATCATGAACGCGTTGCTTTGGGCAATGAGGAGGGCCTGTTTGTCATCCACGTCACCAAAGATG
Seq A exon
AAATCATTCGTGTGGGTGATGTCAAGAAGGTGCATCATGTAGAACTGATGCCCACGGAGCACATACTGGCCGTCATCTCGGGCAGGAACCGACAAGTATGTCTGGTCTCCATGGCGGGTCTCGACGGGAGGGAGGTCGACAAGAATAAGGTGGCAGATACTAAAAACTGCCAGTTGCTGGTGTCCGGTGTGGTTCGCAATGTCACCTGCTTCTGCCTCGCCATTAAACGGCAGATCTCATGCTTCGAAATTAACAAGAGCAAGTCACGACACTCCCATCTCGTGGACATACAA
Seq C2 exon
GCTCCAGGAACTGTCCAATGGATGGCGCTGTTCAACCAGCAGTTGTGTGTTGGTTACCCATCAGGCTTCATGCGCTACAGTTTGTATGGAGAAACACCTCCAGCCAGCTTACTTCATCCAGATGACCCCACACTGGCATTTATTAAAACAGACAACCTGGATGCCCTTTGTGCTGTGGAAATCTCCAATAAGGAACTGCTGCTCTGCTTCAGTAAAATAGCAGTGTATGTTGACACACACGGCAGACGCTCGCGCCAGCAGGAGCTGATGTGGCCCGCGGCGCCCACCGCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016464-'34-36,'34-35,35-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(8.0=100)
A:
PF0078017=CNH=FE(36.9=100)
C2:
PF0078017=CNH=FE(37.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATGAACGCGTTGCTTTGG
R:
TGCCGTGTGTGTCAACATACA
Band lengths:
307-600
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]