DreEX6049320 @ danRer10
Exon Skipping
Gene
ENSDARG00000043130 | notch2
Description
notch 2 [Source:ZFIN;Acc:ZDB-GENE-000329-4]
Coordinates
chr8:19569109-19570157:+
Coord C1 exon
chr8:19569109-19569261
Coord A exon
chr8:19569641-19569869
Coord C2 exon
chr8:19569956-19570157
Length
229 bp
Sequences
Splice sites
3' ss Seq
CTCATTTGTTTGTTCTCCAGATC
3' ss Score
9.67
5' ss Seq
AACGTACGT
5' ss Score
9.51
Exon sequences
Seq C1 exon
GAGCCCAATGCACAGAGGATAAAGACGAGTGTAAGAAGAGCCCTTGTCAGAATGGTGCTCGCTGTGTGAATATAGTTGGCAGCTACCGTTGCGAATGCCCGCCTGGATACAGCGGGGACAACTGCCAGACCAACATCGATGACTGCAGCTCTA
Seq A exon
ATCCATGCCGTAACGGGGGTACATGTGTTGATAAAGTGGGCCGGTACTTGTGCGAGTGCAGAGCTGGTTTTTATGGCGAGCGCTGTGAGGAAGAGGTGGACGAGTGCGCCAGCAACCCCTGCTGGAATGGAGGACACTGCACAGACTACGTGAACAGCTACACATGCCAATGCCCGCCAGGCTATGACGGCATCAATTGTGAACGTGATATCCCAGACTGCACTGAAAC
Seq C2 exon
CTCTTGTCTGAACAATGGGACTTGTGTGGATGGAATTAACCATTTTTCCTGCCGTTGTCGGCAAGGTTTTTCGGGCCAGTATTGCCAGTTTGAACTGAACGAGTGTGACTCTCATCCCTGTAAAAACGGTGGCACCTGCATAGACGGTCTGGGGACTTTCCACTGCAACTGCCCACTAATGTACAATGGAAAAACCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043130-'17-20,'17-19,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.1=3.8),PF0000822=EGF=WD(100=65.4),PF0000822=EGF=PU(9.7=5.8)
A:
PF0000822=EGF=PD(87.1=35.1),PF0000822=EGF=WD(100=40.3),PF0000822=EGF=PU(9.7=3.9)
C2:
PF0000822=EGF=PD(87.1=39.7),PF0000822=EGF=WD(100=45.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTGTCAGAATGGTGCTCG
R:
ATTAGTGGGCAGTTGCAGTGG
Band lengths:
293-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]