GgaEX6043601 @ galGal4
Exon Skipping
Gene
ENSGALG00000002922 | NOTCH2
Description
neurogenic locus notch homolog protein 2 precursor [Source:RefSeq peptide;Acc:NP_001238962]
Coordinates
chr8:4198098-4203118:+
Coord C1 exon
chr8:4198098-4198250
Coord A exon
chr8:4200963-4201191
Coord C2 exon
chr8:4202917-4203118
Length
229 bp
Sequences
Splice sites
3' ss Seq
AGTTAATGCTTCTCTCTTAGATC
3' ss Score
6.23
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGGAGAGGTGTACAGTGGATATTGATGAATGTCTCTCAAAGCCCTGCAAAAATCATGCTTTGTGCCATAATATTCAAGGCAGTTACCTGTGTGAATGTCGTCCAGGCTTCACTGGAGGAGACTGTGACAGTAACATTGATGACTGCCTGTCTA
Seq A exon
ATCCCTGCCAAAATGGAGCTTCATGTGTGGATGGGATAAACTCTTTCTCATGCATTTGCCTACCTGGATTTCATGGAGATAAATGTCAAACAGATACCAATGAATGTCTGAGTGAACCGTGCAGGAATGGAGGCACGTGCACCCACTATGTCAACAGCTACACGTGCAAGTGTCAGCCTGGGTTTGAGGGAACCAACTGTGAGAACAACATCGATGAATGCACCGAGAG
Seq C2 exon
CTCTTGTTTCAATGGAGGTACCTGTGTGGATGGCATCAACTCCTTTACCTGCCAGTGTCCAGTGGGCTTTACGGGGCCCTTCTGCCTCATGGAAATTAATGAGTGTGATTCACATCCTTGCTTGAACAAAGGGTCTTGTGTGGACAGCCTGGGCAAATACCGATGCATATGTCCTTTGGGTTACACGGGGAAGAACTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002922-'27-35,'27-34,29-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.1=3.8),PF0764510=EGF_CA=WD(100=75.0),PF0000822=EGF=PU(9.7=5.8)
A:
PF0000822=EGF=PD(87.1=35.1),PF0000822=EGF=WD(100=40.3),PF0000822=EGF=PU(9.7=3.9)
C2:
PF0000822=EGF=PD(87.1=39.7),PF0000822=EGF=WD(100=45.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCTCAAAGCCCTGCAAA
R:
ATGCATCGGTATTTGCCCAGG
Band lengths:
292-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]