RnoEX6010759 @ rn6
Exon Skipping
Gene
ENSRNOG00000018835 | Notch2
Description
notch 2 [Source:RGD Symbol;Acc:3188]
Coordinates
chr2:200287409-200293546:+
Coord C1 exon
chr2:200287409-200287561
Coord A exon
chr2:200292336-200292564
Coord C2 exon
chr2:200293345-200293546
Length
229 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTTGTCATGACTCAGACC
3' ss Score
5.8
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTCAGCGCTGTACAGTTGACGTTGATGAGTGTGTCTCCAAGCCGTGTATGAACAATGGCATCTGCCATAATACTCAGGGCAGCTACATGTGCGAGTGCCCTCCCGGCTTCAGTGGTATGGACTGTGAGGAGGACATCAATGACTGCCTTGCCA
Seq A exon
ACCCCTGCCAGAACGGAGGCTCCTGTGTGGACAAAGTGAACACCTTCTCCTGCCTGTGCCTTCCTGGCTTCGTAGGGGACAAGTGCCAAACAGACATGAATGAATGTCTGAGCGAGCCCTGTAAGAATGGGGGGACCTGCTCTGACTACGTCAACAGCTACACCTGCACGTGCCCTGCGGGCTTCCATGGAGTCCACTGTGAAAACAACATCGATGAGTGCACTGAGAG
Seq C2 exon
CTCCTGTTTCAATGGCGGCACGTGTGTTGATGGGATCAACTCTTTCTCTTGCTTATGCCCTGTGGGTTTCACTGGTCCCTTCTGCCTCCATGATATCAATGAGTGCAGCTCTAACCCGTGCCTGAATTCGGGAACGTGTGTTGATGGCCTGGGTACCTACCGATGCACCTGTCCCTTGGGCTACACTGGGAAAAACTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018835-'28-25,'28-24,30-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.1=3.8),PF0000822=EGF=WD(100=57.7),PF0000822=EGF=PU(9.7=5.8)
A:
PF0000822=EGF=PD(87.1=35.1),PF0000822=EGF=WD(100=40.3),PF0000822=EGF=PU(9.7=3.9)
C2:
PF0000822=EGF=PD(87.1=39.7),PF0000822=EGF=WD(100=45.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGTGTGTCTCCAAGCCG
R:
GGACAGGTGCATCGGTAGGTA
Band lengths:
304-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]