DreEX6050698 @ danRer10
Exon Skipping
Gene
ENSDARG00000079327 | hmcn2
Description
hemicentin 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9765]
Coordinates
chr8:32759803-32766841:+
Coord C1 exon
chr8:32759803-32759931
Coord A exon
chr8:32762953-32763264
Coord C2 exon
chr8:32766722-32766841
Length
312 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTGGTCATTGCAGATA
3' ss Score
8.22
5' ss Seq
TAGGTGTGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
ACATAGATGAATGCCAAGACGGTAGTCACATGTGTCGGTACAGTCAGATATGCCAAAACACGATTGGTGGGTATGGATGTGTTTGTCCTCGAGGATACCGCTCCCAAGGCGTGGGTCGACCTTGCTTAG
Seq A exon
ATATTGATGAATGTGCACAGGTGCCAAGTCCTTGTGCTTTTCAGTGCCGCAACGTACCAGGCAGTTTCCGCTGCGTATGCCCACCAGGGACAGTCCTTCTGGGGGATGGTCGCTCTTGCGCTGGGCTTGAGAGAGGCCACATCTTCACCAACAGTACCCGGGTGCAAGCCAGACTGCGGCCACAGCTGGTATCTGCTTTGGAGAGACCTTACCTCACTCGCCTCTCAGTCCTACCAGAGCACCTTGGTTCCTCACGTCGCCCCCGGCATGAATGCCCCGTAGGATATACTAGCAAGGATGGAACTTGTATAG
Seq C2 exon
ATATCGATGAATGCGCATTTAGAAAGCCTTGTCAACATGAGTGCAGAAACACTATAGGAAGCTACCAGTGCACCTGCCCACCAGGATACCAATTATTATCCAATGGACGGACATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079327-'87-93,'87-92,88-93=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=38.1),PF126622=cEGF=PU(77.8=13.3)
C2:
PF126622=cEGF=PD(16.7=7.3),PF126622=cEGF=PU(83.3=48.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATAGATGAATGCCAAGACGGT
R:
TTTGCATGTCCGTCCATTGGA
Band lengths:
248-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]