DreEX6051097 @ danRer10
Exon Skipping
Gene
ENSDARG00000036593 | kdm2ba
Description
lysine (K)-specific demethylase 2Ba [Source:ZFIN;Acc:ZDB-GENE-040426-2195]
Coordinates
chr8:40208918-40212006:-
Coord C1 exon
chr8:40211000-40212006
Coord A exon
chr8:40209357-40209520
Coord C2 exon
chr8:40208918-40209079
Length
164 bp
Sequences
Splice sites
3' ss Seq
GATTTTAATATCTTTTCTAGGTG
3' ss Score
9.46
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
ATGGAGATCCGTCGCACAGAACATTCACTGGCCAATGAAAACCAGCAGCCACTAATGAGCGAACCTGAGGACAGTGAGAACGAGGAACCAAAAAGAGGCTTGCGCAACGGGACTGCAGGGAACGCAGGAGGAGGCGGAGGAGGAGTTGAAAGGGGAGCAGGTGGAGAGGCAGGAGGGGAGCGACCGCACTTACGAGCAAGGGAGATGAATGGGACGTCTTGGGAGCTTCGGCACTTCTACCCTCCTCAGATCACCCCACTTGGCTTGAACCGCAGTTCGCCTACAGTCAGACCTCTTCCTGCCCGTTCCCCTCCCAAGTGTGTTCAGATGGAGCGACATGTGATCCGGCCACCGCCAATCTGCCCTCCACCTGACAGACTACCACTAGCTGATGGTCGTAATCACATAGCTCCCAGAGAGGCATGGCTGGCCATCTTCAGCCACTTGAGCCATCGTGAACTTTGTGTGTGTATGCGCGTGTGCCGGACATGGAATCGCTG
Seq A exon
GTGCTGTGACAAGAGATTATGGACCCGTATAGATTTGAAGCGTTGTAAGTCCATCACTCCACTCATGCTAAGTGGGATAATTCGCAGGCAGCCCATCACTCTGGACCTGAGCTGGACTAACATCTCCAAGAAGCAACTAAGCTGGCTAATTAACCGATTACCAG
Seq C2 exon
GACTAAGAGTTCTCCTCCTGTCGGGTTGTTCATGGGTGGCCGTCTCGGCTCTCTGCACATCCAGTTGTCCTCTACTTCGCACACTTGACCTGCAGTGGGTGGAAGGGCTAAAAGATCCCCAGATGAGAGACCTGCTTTCCCCTCCAACTGACAACAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036593-'13-15,'13-13,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.827 A=0.000 C2=0.218
Domain overlap (PFAM):
C1:
PF0064628=F-box=PU(77.6=13.4)
A:
PF0064628=F-box=PD(20.7=21.4),PF138551=LRR_8=PU(40.4=41.1)
C2:
PF138551=LRR_8=PD(57.9=60.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTCGCCTACAGTCAGAC
R:
CCCGACAGGAGGAGAACTCTT
Band lengths:
254-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]