GgaEX0005621 @ galGal4
Exon Skipping
Gene
ENSGALG00000004225 | KDM2B
Description
lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr15:5471837-5474717:-
Coord C1 exon
chr15:5474044-5474717
Coord A exon
chr15:5472483-5472646
Coord C2 exon
chr15:5471837-5471998
Length
164 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTCTTTTTGGGTAGGTG
3' ss Score
9.5
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GACAAGAAGAAGTTCAAGATGAGGCGGAAAAGGCGGCTTCCCAATAAGGAACTGAGCAAGGAGCTCAGCAAGGAGCTCAACCAAGAGATCCAAAAAACCGAGAATAGCCTTGCCAATGAGAATCACCAACCCATCAAATCTGAACCCGAGAGCGAAAACGAGGAACCCAAGCGCGCCTTGAACAACAGCGAGAGACTCCATAGGTTCAGCAAAGGGTTGAACGGGACTCCCCGGGAGCTGAGGCACCCGCTCATCCCCAGCCTGCGGAGCACGCCGCGGGGCATCGCCCGGCCCCCGCCCTCGCTCTCCCCTCCCAAATGCATTCAGATGGAGCGGCACGTCATCCGGCCGCCCCCCATCAGCCCCCCTCCGGACTCTCTCCCCCTGGATGATGGGGCAGCCCACGTGATGCAGAGGGAAGTCTGGATGGCTGTCTTTAGCTACCTCAGTCATAGAGACTTGTGCATCTGTATGAGAGTTTGCAAGACCTGGAACAGATG
Seq A exon
GTGCTGTGACAAAAGATTATGGACCAAAATAGATTTAAACCATTGTAAATCCATCACTCCACTTATGCTTAGTGGCATTATTAGGAGACAGCCTGTAACCCTTGATCTTAGCTGGACAAATATATCTAAAAAGCAGCTGAGCTGGCTTATCAACAGACTGCCAG
Seq C2 exon
GTCTTCGAGACCTGCTGTTATCAGGGTGCTCATGGATAGCAGTGTCAGCACTTTGTAGTTCCAGCTGTCCTTTACTCCGAACTCTGGACGTGCAGTGGGCAGAAGGACTGAAAGACGCTCAGATGAGAGACCTCCTGTCACCGCCCACAGATAACCGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004225_MULTIEX1-11/13=10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.818 A=0.000 C2=0.127
Domain overlap (PFAM):
C1:
PF0064628=F-box=PU(77.6=20.0)
A:
PF0064628=F-box=PD(20.7=21.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTGATGCAGAGGGAAGTC
R:
GTTATCTGTGGGCGGTGACAG
Band lengths:
253-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]