DreEX6051535 @ danRer10
Exon Skipping
Gene
ENSDARG00000053196 | mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:ZFIN;Acc:ZDB-GENE-030131-2974]
Coordinates
chr8:46162718-46180210:-
Coord C1 exon
chr8:46180071-46180210
Coord A exon
chr8:46164951-46165051
Coord C2 exon
chr8:46162718-46162833
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTATTTTTTTGTCAGGGG
3' ss Score
7.56
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GAGATCCAGGCCACCTGGTATGAGAAACTTCATGAGTGGGAAGATGCTCTGGTTGCCTACGATAAAAAAATTGACATGAACAAAGATGATCCAGAGCTTATTTTGGGTCGCATGAGATGTCTGGAAGCACTAGGCGAATG
Seq A exon
GGGTCAGCTTCACCAACAGTGCTGTGAGGAGTGGACTCTGGTCAGTGAAGAAACTCAAGCCAAGATGGCCCGCATGGCAGCAGCTGCGGCGTGGGGACTGG
Seq C2 exon
GCCACTGGGACAGTATGGAAGAGTATACCTGCATGATCCCGCGAGACACCCACGATGGAGCCTTTTACCGGGCAGTGCTTGCTTTACATCAGGATCTGTTTTCATTGGCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053196-'31-34,'31-33,32-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(75.4=100)
A:
PF134141=TPR_11=PD(18.0=31.4),PF0225918=FAT=PU(2.9=31.4)
C2:
PF0225918=FAT=FE(10.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCACCTGGTATGAGAAACT
R:
CTGCTGAGCCAATGAAAACAGA
Band lengths:
249-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]