MmuEX0030123 @ mm10
Exon Skipping
Gene
ENSMUSG00000028991 | Mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:MGI Symbol;Acc:MGI:1928394]
Coordinates
chr4:148514826-148524574:+
Coord C1 exon
chr4:148514826-148514965
Coord A exon
chr4:148521292-148521392
Coord C2 exon
chr4:148524459-148524574
Length
101 bp
Sequences
Splice sites
3' ss Seq
GCACGTTTCTCTTACTCCAGGGG
3' ss Score
6.86
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
GAGATCCAGGCCACCTGGTATGAGAAGCTGCATGAGTGGGAGGATGCTCTCGTGGCCTACGACAAGAAGATGGACACAAACAAGGAAGACCCGGAGCTGATGCTGGGCCGAATGCGCTGCCTCGAGGCCTTGGGGGAATG
Seq A exon
GGGCCAGCTTCATCAGCAGTGCTGTGAAAAGTGGACTCTGGTTAATGATGAGACCCAGGCTAAGATGGCCCGGATGGCTGCTGCTGCAGCGTGGGGTTTAG
Seq C2 exon
GTCAGTGGGACAGCATGGAGGAGTACACCTGCATGATCCCACGGGACACCCACGATGGAGCCTTTTACAGGGCAGTGTTGGCTCTACATCAGGATCTCTTCTCCTTGGCCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028991_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0225918=FAT=PU(2.8=31.4)
C2:
PF0225918=FAT=FE(15.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTGGTATGAGAAGCTGC
R:
TGGGCCAAGGAGAAGAGATCC
Band lengths:
242-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types