RnoEX6024461 @ rn6
Exon Skipping
Gene
ENSRNOG00000009615 | Mtor
Description
mechanistic target of rapamycin kinase [Source:RGD Symbol;Acc:68371]
Coordinates
chr5:165329683-165338340:+
Coord C1 exon
chr5:165329683-165329822
Coord A exon
chr5:165335269-165335369
Coord C2 exon
chr5:165338225-165338340
Length
101 bp
Sequences
Splice sites
3' ss Seq
GCCTGTTTCTCTTCCTCCAGGGG
3' ss Score
11.11
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
GAGATCCAGGCCACCTGGTATGAGAAGTTGCATGAGTGGGAGGACGCCCTTGTGGCCTACGACAAGAAGATGGACACGAACAAGGATGACCCAGAGCTGATGCTGGGCCGCATGCGCTGTCTCGAGGCCTTGGGAGAATG
Seq A exon
GGGCCAGCTTCATCAGCAGTGCTGTGAAAAGTGGACTCTGGTTAATGACGAGACCCAGGCTAAGATGGCCCGGATGGCTGCTGCAGCAGCATGGGGTTTAG
Seq C2 exon
GTCAGTGGGACAGCATGGAGGAGTACACCTGTATGATTCCTCGGGATACTCACGATGGAGCATTCTACAGAGCAGTGTTGGCACTGCATCAGGATCTCTTCTCCTTGGCTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009615-'45-43,'45-41,46-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0225918=FAT=PU(2.8=31.4)
C2:
PF0225918=FAT=FE(9.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCACCTGGTATGAGAAGT
R:
AGCCAAGGAGAAGAGATCCTGA
Band lengths:
243-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]