DreEX6054372 @ danRer10
Exon Skipping
Gene
ENSDARG00000059259 | pabpc4
Description
poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663]
Coordinates
chr17:25294750-25297933:-
Coord C1 exon
chr17:25297796-25297933
Coord A exon
chr17:25297336-25297431
Coord C2 exon
chr17:25294750-25295019
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGTAAATTTGTGTTTACAGGGT
3' ss Score
8.25
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GCGGTGGAAGAGATGAATGGTACTGAGCTCAATGGTAAGACGGTGTTTGTTGGCCGAGCACAAAAAAAAATGGAGCGACAAGCAGAACTCAAGAGGAAGTTTGAACAGCTTAAACAGGAAAGAATCAGCAGATATCAG
Seq A exon
GGTGTTAACTTGTACATCAAGAATCTTGATGACACCATCGATGATGAGAAACTTCGTAAAGAGTTTTCTCCTTTTGGCTCCATTACAAGTGCCAAG
Seq C2 exon
GTGATGCTGGAGGAGGGCAGGTCCAAAGGTTTTGGTTTTGTGTGTTTCTCCTCTCCTGAGGAAGCCACAAAGGCTGTGACAGAGATGAATGGGCGTATTGTGGGCTCCAAACCACTATACGTAGCCCTAGCTCAACGTAAAGAAGAGCGCAAAGCTCATCTGACCAACCAGTACATGCAGCGGATTGCCGGTATGAGGGCCATGCCTGCCAATGCCATCATCAACCAGTTCCAGCCTGCCGGCGGATACTTCATGCCAGCCGTGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059259-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=0.000 C2=0.211
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(21.4=32.6)
A:
PF0007617=RRM_1=PU(40.6=87.5)
C2:
PF0007617=RRM_1=PD(56.5=43.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTGGAAGAGATGAATGGT
R:
CAAAACCTTTGGACCTGCCCT
Band lengths:
172-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]