GgaEX0005069 @ galGal3
Exon Skipping
Gene
ENSGALG00000003800 | PABPC4
Description
NA
Coordinates
chr23:5734874-5736470:-
Coord C1 exon
chr23:5736333-5736470
Coord A exon
chr23:5735637-5735732
Coord C2 exon
chr23:5734874-5735146
Length
96 bp
Sequences
Splice sites
3' ss Seq
TACTGTTCTCTACCTTTTAGGGA
3' ss Score
9.82
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GCAGTAGAAGAAATGAATGGGAAGGATATCAATGGGAAAATGGTGTTTGTAGGCCGAGCACAGAAGAAGGTGGAGCGCCAGGCAGAGCTGAAAAGGAGATTTGAACAGTTAAAACAAGAGAGAATCAGCCGGTACCAG
Seq A exon
GGAGTTAACCTATACATTAAAAACCTAGATGACACTATAGATGATGAAAAACTGAGGAAGGAATTCTCACCTTTTGGGTCAATAACAAGTGCAAAG
Seq C2 exon
GTGATGCTAGAAGATGGACGGAGCAAAGGGTTTGGCTTTGTCTGCTTTTCCTCTCCAGAGGAAGCTACGAAGGCTGTGACAGAGATGAATGGTCGAATAGTGGGCTCTAAGCCACTCTATGTTGCACTTGCACAAAGGAAAGAAGAGCGAAAGGCTCATCTAACTAATCAGTACATGCAGCGCATTGCTGGGATGAGAGCCTTGCCAGCCAACACAATCATTAATCAGTTCCAGCCTGCTGCTGGCGGTTATTTCATGCCTGCTGTGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003800-'7-8,'7-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.000 C2=0.176
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(20.3=30.4)
A:
PF0007617=RRM_1=PU(40.6=87.5)
C2:
PF0007617=RRM_1=PD(56.5=42.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGTAGGCCGAGCACAGAA
R:
GTCACAGCCTTCGTAGCTTCC
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]