GgaEX0005069 @ galGal4
Exon Skipping
Gene
ENSGALG00000003800 | PABPC4
Description
poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:HGNC Symbol;Acc:HGNC:8557]
Coordinates
chr23:5422612-5424208:-
Coord C1 exon
chr23:5424071-5424208
Coord A exon
chr23:5423375-5423470
Coord C2 exon
chr23:5422612-5422884
Length
96 bp
Sequences
Splice sites
3' ss Seq
TACTGTTCTCTACCTTTTAGGGA
3' ss Score
9.82
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GCAGTAGAAGAAATGAATGGGAAGGATATCAATGGGAAAATGGTGTTTGTAGGCCGAGCACAGAAGAAGGTGGAGCGCCAGGCAGAGCTGAAAAGGAGATTTGAACAGTTAAAACAAGAGAGAATCAGCCGGTACCAG
Seq A exon
GGAGTTAACCTATACATTAAAAACCTAGATGACACTATAGATGATGAAAAACTGAGGAAGGAATTCTCACCTTTTGGGTCAATAACAAGTGCAAAG
Seq C2 exon
GTGATGCTAGAAGATGGACGGAGCAAAGGGTTTGGCTTTGTCTGCTTTTCCTCTCCAGAGGAAGCTACGAAGGCTGTGACAGAGATGAATGGTCGAATAGTGGGCTCTAAGCCACTCTATGTTGCACTTGCACAAAGGAAAGAAGAGCGAAAGGCTCATCTAACTAATCAGTACATGCAGCGCATTGCTGGGATGAGAGCCTTGCCAGCCAACACAATCATTAATCAGTTCCAGCCTGCTGCTGGCGGTTATTTCATGCCTGCTGTGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003800-'11-13,'11-10,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.000 C2=0.176
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(20.3=30.4)
A:
PF0007617=RRM_1=PU(40.6=87.5)
C2:
PF0007617=RRM_1=PD(56.5=42.9)
Main Skipping Isoform:
ENSGALT00000006028fB533
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGTAGGCCGAGCACAGAA
R:
GTCACAGCCTTCGTAGCTTCC
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]