DreEX6057936 @ danRer10
Exon Skipping
Gene
ENSDARG00000000380 | pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:ZFIN;Acc:ZDB-GENE-030616-42]
Coordinates
chr14:24731370-24732193:-
Coord C1 exon
chr14:24732104-24732193
Coord A exon
chr14:24731868-24732008
Coord C2 exon
chr14:24731370-24731444
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTCCAAATCCACTTTGAAGGTA
3' ss Score
6.24
5' ss Seq
AAAGTGACT
5' ss Score
1.17
Exon sequences
Seq C1 exon
ACACTGAAGAAATATCTCAACTTTGCTAATCTTGTGCTCCGAGTGTTTCACCTGAGCTACCTGCACAACTGTGAAACCAGAAGAGGACAA
Seq A exon
GTATTGCTCTGGTCTGCCAGCAAAGTGTTTGAAGAGCTGACTGACATTGAGAGACAGTTCCACAAGGCTCTTTATACAGTCCGAGCTTTTCTCAACTGTGACCGCTACTCTGTTGGCCTTCTCGACATGACCAAAACTAAA
Seq C2 exon
GAGTTCTTTGACCTTTGGCCCGTACTGATGGGAGAAGTACCTCCATATAGCGGACCAAAGACCCCTGATGGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000380-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(8.0=40.0)
A:
PF0159021=GAF=PU(18.0=68.1)
C2:
PF0159021=GAF=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGAAGAAATATCTCAACTTTGC
R:
TCTGCCATCAGGGGTCTTTGG
Band lengths:
165-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]