DreEX6058108 @ danRer10
Exon Skipping
Gene
ENSDARG00000004078 | acsl4a
Description
acyl-CoA synthetase long-chain family member 4a [Source:ZFIN;Acc:ZDB-GENE-040426-1565]
Coordinates
chr14:28138064-28140519:+
Coord C1 exon
chr14:28138064-28138241
Coord A exon
chr14:28138431-28138540
Coord C2 exon
chr14:28140381-28140519
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTATTCATTTATTTTTGCAGTGG
3' ss Score
8.24
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TTGATTCTTGGTGAATATAAATGGAAGTCCTATGAGGAGTTAGACATTGAAGTCAGTCATTTTGGGAGCGGACTGGCAGCACTAGGACAACAGCCAAAAAGCACCATTGCCATTTTCTGTGAGACGCGGGCTGAATGGATGATCACCGCTCAAGCCTGCTTCAGACGCAACTTCCCCT
Seq A exon
TGGTCACCTTTTATGCGACTCTTGGAGAAGACGCAGTGGCTTATGGATTGAATGAGTCTGGAGTTACACACCTGGTCACCAGTATAGAATTGCTGGAAACAAAACTAAAG
Seq C2 exon
AGTGTTCTTCTTCAAATTCCCAATTTAAAGCACATCATCTACGTGGACAATAAGAGCATGAACACAGCAGGATTTCCACAGGGCATCCAGATCCACAGCATGCACTCAGTTGAAGAGCTGGGAGCCAAGCCAGAAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004078-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.4=100)
A:
PF0050123=AMP-binding=FE(7.6=100)
C2:
PF0050123=AMP-binding=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCATTTTGGGAGCGGACTG
R:
CCCAGCTCTTCAACTGAGTGC
Band lengths:
246-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]