GgaEX6033627 @ galGal4
Exon Skipping
Gene
ENSGALG00000008088 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]
Coordinates
chr4:13743552-13745351:+
Coord C1 exon
chr4:13743552-13743729
Coord A exon
chr4:13745012-13745121
Coord C2 exon
chr4:13745213-13745351
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTTGAATGTAACAGTTG
3' ss Score
5.02
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
TTAATCTTAGGAACCTACAGATGGCTGTCCTATGAAGAAGTAAATCAGAAAGTGAATCGCTTGGGGAGCGGACTGATAGCCCTGGGACTAACCCCAAAGAGCACCGTTGTTATCTTTTGCGAGACCCGAGCAGAATGGATGATCGCAGCCCTGGCCTGCTTCAAGTACAACTTTCCTC
Seq A exon
TTGTTACCTTGTATGCTACACTGGGTGAAGAGGCAGTAACCTATGGTCTCAATGAATGTGGAGCGTCGTATCTGATCACCAGTGCAGAGCTTCTTGAGAGCAAACTTAAG
Seq C2 exon
GCTACATTGCCACAGATTTCCTGTCTTAAACATATAATTTATGTGGATAATAAGAATATCAATAAATCTGAATACCCTGAAAATGTTGAGATTCATAGTATGCAGACAGTGGAAGAGCTGGGAGCCAAACCAGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008088-'4-11,'4-10,6-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.170
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.4=100)
A:
PF0050123=AMP-binding=FE(7.5=100)
C2:
PF0050123=AMP-binding=FE(9.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGATAGCCCTGGGACTA
R:
TTTTCTGGTTTGGCTCCCAGC
Band lengths:
246-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]