RnoEX6026658 @ rn6
Exon Skipping
Gene
ENSRNOG00000019180 | Acsl4
Description
acyl-CoA synthetase long-chain family member 4 [Source:RGD Symbol;Acc:69401]
Coordinates
chrX:113620565-113625488:-
Coord C1 exon
chrX:113625311-113625488
Coord A exon
chrX:113623845-113623954
Coord C2 exon
chrX:113620565-113620703
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTCATGTTTCCTTCTTGTAGTTG
3' ss Score
8.49
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TTAATTCTTGGGAATTATAAATGGATAAACTATCTTGAAGTGAACTGCCGAGTGAATAACTTTGGAAGTGGCCTCACTGCACTGGGACTGAAACCAAAGAACACCATTGCCATTTTCTGTGAGACCAGGGCGGAGTGGATGATTGCAGCGCAGACCTGCTTTAAGTACAACTTTCCGC
Seq A exon
TTGTGACTTTATATGCTACCCTTGGCAAAGAAGCTGTCGTTCATGGATTAAATGAGTCTGAGGCTTCCTATCTGATTACTAGTGTTGAACTTCTGGAAAGCAAACTGAAG
Seq C2 exon
GCGGCATTATTAGATATCAATTGTGTTAAACATATCATTTATGTGGATAACAAGACTATCAATAGAGCGGAGTACCCCGAGGGGCTTGAGATTCACAGCATGCAGTCAGTAGAGGAGCTGGGATCCAAGCCAGAAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019180-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.234
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.4=100)
A:
PF0050123=AMP-binding=FE(7.5=100)
C2:
PF0050123=AMP-binding=FE(9.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGCACTGGGACTGAAAC
R:
TTTTCTGGCTTGGATCCCAGC
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]