DreEX6058230 @ danRer10
Exon Skipping
Gene
ENSDARG00000037101 | mtmr7a
Description
myotubularin related protein 7a [Source:ZFIN;Acc:ZDB-GENE-060421-7754]
Coordinates
chr14:30067204-30069291:+
Coord C1 exon
chr14:30067204-30067329
Coord A exon
chr14:30068950-30068999
Coord C2 exon
chr14:30069091-30069291
Length
50 bp
Sequences
Splice sites
3' ss Seq
ATTTATATTTGCATCTGTAGGTG
3' ss Score
9.13
5' ss Seq
CAGGTTGGC
5' ss Score
5.52
Exon sequences
Seq C1 exon
GCTGTGGCAGATGAAGGTGTCAGTGTCTTGGTTCATTGTTCTGACGGCTGGGACAGGACGTCTCAGGTGTGCTCTGTGGCCAGTGTTCTTCTGGACCCTTATTACAGAACCATCAAAGGACTGATG
Seq A exon
GTGCTGATTGAGAAAGACTGGGTTTCATTTGGACACAAGTTTTCACACAG
Seq C2 exon
ATGCGGTCACCTAGACGGAGAAGCCAAAGAAGTGTCTCCTGTTCTAGACCAGTTTCTGGAATGTGTATGGCAGCTTATGGACCAGTTTCCCTGCGCTTTTGAGTACAATGAGAAGTTTCTAATCAGCATCCACAACCACGTTTACTCCAGCCACTACGGCAACTTCATTTGTAACAGCCAGAAGGAGAGGAAAGATCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037101-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.0=100)
A:
PF066029=Myotub-related=FE(4.7=100)
C2:
PF066029=Myotub-related=PD(19.2=97.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGATGAAGGTGTCAGTGT
R:
TGGCTTCTCCGTCTAGGTGAC
Band lengths:
147-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]