MmuEX6035397 @ mm9
Exon Skipping
Gene
ENSMUSG00000039431 | Mtmr7
Description
myotubularin related protein 7 [Source:MGI Symbol;Acc:MGI:1891693]
Coordinates
chr8:41643510-41648049:-
Coord C1 exon
chr8:41647924-41648049
Coord A exon
chr8:41646211-41646260
Coord C2 exon
chr8:41643510-41643710
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGTGTGTATGTGTAGGTA
3' ss Score
8.06
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
GCAGTTTCAGAGGAAGGGGCAAGTGTGCTTGTTCACTGTTCTGACGGCTGGGACAGAACGGCCCAGGTGTGCTCGGTGGCTAGCCTGCTGCTGGACCCTTACTACCGGACTCTGAAAGGATTCATG
Seq A exon
GTATTAATTGAAAAGGACTGGATTTCCTTCGGACATAAATTTAATCATAG
Seq C2 exon
ATATGGCAACTTAGATGGTGACCCAAAAGAAATCTCTCCAGTAATCGACCAGTTCATTGAGTGTGTCTGGCAGCTAACGGAACAGTTCCCTTGCGCCTTTGAGTTCAACGAGAGGTTTCTGACTCACATTCAGCATCATGTTTATTCCTGCCAGTTTGGGAACTTCCTGTGTAATAGCCAGAAGGAGAGGCGAGAACTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039431-'13-11,'13-10,15-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.0=100)
A:
PF066029=Myotub-related=FE(4.7=100)
C2:
PF066029=Myotub-related=PD(19.2=97.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACCCTTACTACCGGACT
R:
CGTTGAACTCAAAGGCGCAAG
Band lengths:
146-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: