MmuEX6035397 @ mm10
Exon Skipping
Gene
ENSMUSG00000039431 | Mtmr7
Description
myotubularin related protein 7 [Source:MGI Symbol;Acc:MGI:1891693]
Coordinates
chr8:40558156-40562695:-
Coord C1 exon
chr8:40562570-40562695
Coord A exon
chr8:40560857-40560906
Coord C2 exon
chr8:40558156-40558356
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGTGTGTATGTGTAGGTA
3' ss Score
8.06
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
GCAGTTTCAGAGGAAGGGGCAAGTGTGCTTGTTCACTGTTCTGACGGCTGGGACAGAACGGCCCAGGTGTGCTCGGTGGCTAGCCTGCTGCTGGACCCTTACTACCGGACTCTGAAAGGATTCATG
Seq A exon
GTATTAATTGAAAAGGACTGGATTTCCTTCGGACATAAATTTAATCATAG
Seq C2 exon
ATATGGCAACTTAGATGGTGACCCAAAAGAAATCTCTCCAGTAATCGACCAGTTCATTGAGTGTGTCTGGCAGCTAACGGAACAGTTCCCTTGCGCCTTTGAGTTCAACGAGAGGTTTCTGACTCACATTCAGCATCATGTTTATTCCTGCCAGTTTGGGAACTTCCTGTGTAATAGCCAGAAGGAGAGGCGAGAACTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039431-'32-20,'32-19,34-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.006
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.0=100)
A:
PF066029=Myotub-related=FE(4.7=100)
C2:
PF066029=Myotub-related=PD(19.2=97.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACCCTTACTACCGGACT
R:
CGTTGAACTCAAAGGCGCAAG
Band lengths:
146-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types