DreEX6059417 @ danRer10
Exon Skipping
Gene
ENSDARG00000103046 | rest
Description
RE1-silencing transcription factor [Source:ZFIN;Acc:ZDB-GENE-080415-1]
Coordinates
chr14:51711318-51717598:-
Coord C1 exon
chr14:51717481-51717598
Coord A exon
chr14:51711806-51712676
Coord C2 exon
chr14:51711318-51711401
Length
871 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTTTCAGTGG
3' ss Score
10.7
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
Exon sequences
Seq C1 exon
GCCGCGAGATGCGCGATGTGCTGGAATGCGTGAGTGGCGCTTCCTCGAGCGAAAGACGGAGAGTTTGGACCGAAGTTTACTTTGAGAAACACACCGCCCGAAGACGAGTCCACCGCCG
Seq A exon
TGGTCCAGCATGTCTCAGCCGGTGTTTCCCACTGCCTCTGGGATCTTCCTGCCGGATCTGCACCATGACGAGGTGTCTGCTCCTCAGCTGGTGATGCTGGCGAATGTGGTGGTGTCCGCGGAGGCGTCTGCATCAGAATACAGCACTGAGGGGAAGCAGATGATGGAGCTCCAGACCGTGGCCTGCAGCAGCTACTCCGACAGCGAAGAAGACGACGACGCCGTCGTGAGATACAGCATGGACACCTCTGAAGATCTCTACACACAACAAGCATCACATATACAGCCAGAGCCAGTGCTGGAGGAGATAGAAATCGTGCGAGTTGGACGTCCACCAAACCAGACGGAAAGCACCGAAAATGCTGCATCGGCAGAACAAAAGCGAACGACGCTCGCCATCCTGGAATCCAGCAAAAAGAAGAAAAAACCTTTCTTCTGCAAACCCTGCCAGTATCAGGGTGAGAACGAGCAGGAGTTTATAGTGCACATACGCACGCACGGAGCCAAGAAGATGCTGGTGGTGAACGGTGGAGATTCTGATGAGGATCTGAGCGCTGATGCAGGACCGCAGACCTCCGTACCCAACGCTGAGAGCGCAGAGAGCAACTCTAAAGGCGTGATCCGCTGCGAGCGCTGCGGCTACAACACAAACCGCTTCGACCACTACATGGCGCACCTCAAACACCACACTAAAGAGGGCGAGGACCAGCGGGTGTTCAAGTGCACCATCTGCGCGTACACCACCATCAGTCAGTACCACTGGAAGAAACACCTGAGGAACCACTTTCCCAGCAAGCTCTTCACCTGCAGCCAGTGCTCATACTTTTCTGACCGCAAAAACAACTACATTCAGCACATCCGGACTCACACTG
Seq C2 exon
GTGAGCGTCCATTCCAGTGCATTTACTGCGAGTACTCCAGTTCCCAAAAAACCCATCTGACAAGACACATGCGAACGCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103046-'0-4,'0-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.392 C2=0.172
Domain overlap (PFAM):
C1:
NA
A:
PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=PU(38.5=3.5)
C2:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCGCGATGTGCTGGAAT
R:
TGCGTTCGCATGTGTCTTGTC
Band lengths:
190-1061
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]