MmuEX6018340 @ mm10
Exon Skipping
Gene
ENSMUSG00000029249 | Rest
Description
RE1-silencing transcription factor [Source:MGI Symbol;Acc:MGI:104897]
Coordinates
chr5:77265491-77275317:+
Coord C1 exon
chr5:77265491-77265788
Coord A exon
chr5:77267932-77268823
Coord C2 exon
chr5:77275234-77275317
Length
892 bp
Sequences
Splice sites
3' ss Seq
GGGGGTTTTGCTTTATCCAGAGT
3' ss Score
3.73
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGCGTCCTGTGCTGGAATGTGCGGCTCCCGCGAGCTCGCGGCGCAGCAGCAGAAGACCGAGGAGCGCCGCCGAGGCCGCGGGCCCCAGACCCGGGCGGCCGGGACCGCAGCGACGGCAGAACCAGGGCCGGCGGTCTGATCCCGCTCCGCGATCGCACCCCGGGATCTCGAGGGCCTCGACGCCCAACTTTTCCCCGCTCTCCCTCCCCTCCCCTCCCCCGAAAGTCCAGCAACAAAGAAAAGGAGTTGGAGCGGCGGCGACGCGGGGGTGGCGGACCGTGGGCGCACAGTTCAGAGG
Seq A exon
AGTACAGTTATGGCCACCCAGGTGATGGGGCAGTCTTCTGGAGGAGGCAGTCTCTTCAACAACAGTGCCAACATGGGCATGGCCTTAACCAACGACATGTACGACCTGCACGAGCTCTCGAAAGCTGAACTGGCAGCCCCTCAGCTCATCATGTTAGCCAACGTGGCCCTGACGGGGGAGGCAAGCGGCAGCTGCTGCGATTACCTGGTCGGTGAAGAGAGGCAGATGGCCGAATTGATGCCCGTGGGAGACAACCACTTCTCAGAAAGTGAAGGAGAAGGCCTGGAAGAGTCGGCTGACCTCAAAGGGCTGGAAAACATGGAACTGGGAAGTTTGGAGCTAAGTGCTGTAGAACCCCAGCCCGTATTTGAAGCCTCAGCTGCCCCAGAAATATACAGCGCCAATAAAGATCCCGCTCCAGAAACACCCGTGGCGGAAGACAAATGCAGGAGTTCTAAGGCCAAGCCCTTCCGGTGTAAGCCTTGCCAGTACGAAGCCGAATCTGAAGAGCAGTTTGTGCATCACATCCGGATTCACAGCGCTAAGAAGTTCTTTGTGGAGGAAAGTGCAGAGAAACAGGCCAAAGCCTGGGAGTCGGGGTCGTCTCCGGCCGAAGAGGGCGAGTTCTCCAAAGGCCCCATCCGCTGTGACCGCTGTGGCTACAATACCAACCGGTATGACCACTACATGGCACACCTGAAGCACCACCTGCGAGCTGGCGAGAACGAGCGCATCTACAAGTGCATCATCTGCACGTACACGACGGTCAGCGAGTACCACTGGAGGAAACACCTGAGAAACCATTTCCCCAGGAAAGTCTACACCTGCAGCAAGTGCAACTACTTCTCAGACAGAAAAAATAACTACGTTCAGCACGTGCGAACTCACACAG
Seq C2 exon
GAGAACGCCCGTATAAATGTGAACTTTGTCCTTACTCAAGCTCTCAGAAGACTCATCTAACGCGACACATGCGGACTCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029249_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.241 C2=0.092
Domain overlap (PFAM):
C1:
NA
A:
PF134651=zf-H2C2_2=WD(100=8.8),PF134651=zf-H2C2_2=PU(38.5=3.4)
C2:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGTGCTGGAATGTGCG
R:
GCGTTAGATGAGTCTTCTGAGAGC
Band lengths:
358-1250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types