DreEX6059418 @ danRer10
Exon Skipping
Gene
ENSDARG00000103046 | rest
Description
RE1-silencing transcription factor [Source:ZFIN;Acc:ZDB-GENE-080415-1]
Coordinates
chr14:51702553-51712676:-
Coord C1 exon
chr14:51711806-51712676
Coord A exon
chr14:51711318-51711401
Coord C2 exon
chr14:51702553-51707780
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTATTTGATTGTTCTGTTAGGTG
3' ss Score
7.46
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AGAACAAAAGCGAACGACGCTCGCCATCCTGGAATCCAGCAAAAAGAAGAAAAAACCTTTCTTCTGCAAACCCTGCCAGTATCAGGGTGAGAACGAGCAGGAGTTTATAGTGCACATACGCACGCACGGAGCCAAGAAGATGCTGGTGGTGAACGGTGGAGATTCTGATGAGGATCTGAGCGCTGATGCAGGACCGCAGACCTCCGTACCCAACGCTGAGAGCGCAGAGAGCAACTCTAAAGGCGTGATCCGCTGCGAGCGCTGCGGCTACAACACAAACCGCTTCGACCACTACATGGCGCACCTCAAACACCACACTAAAGAGGGCGAGGACCAGCGGGTGTTCAAGTGCACCATCTGCGCGTACACCACCATCAGTCAGTACCACTGGAAGAAACACCTGAGGAACCACTTTCCCAGCAAGCTCTTCACCTGCAGCCAGTGCTCATACTTTTCTGACCGCAAAAACAACTACATTCAGCACATCCGGACTCACACTG
Seq A exon
GTGAGCGTCCATTCCAGTGCATTTACTGCGAGTACTCCAGTTCCCAAAAAACCCATCTGACAAGACACATGCGAACGCATTCAG
Seq C2 exon
GTGAAAGGCCTTTCAAATGCGATAACTGCAGCTACCTGGCAGCCAATCAGCATGAGGTGACCCGCCACGCCCGCCAGGTGCACAACGGACCCAAACCACTCAGCTGCCCCTACTGCCAGTACAAGACTGCCGACCGCAGCAACTTCAAGAAGCACGTGGAGCTGCACGTCAACCCGCGCCAGTTCCTCTGCCCCGTCTGCAAGTACGCCGCATCCAAGAAGTGCAACCTGCAGTATCACATCAAGTCCAGACACCCGGGGTGCAAAGATATCTCCATGGACGTGTCGAAGGTGAGACTGCGGGTCAAACGGAGTGACGGAGACGACGCTTCACCCAATAAGCTGACCGCAGAACAGGCCAAAATAATGGAGGAACTGGAGGACGCTGGCCCGATCAACCTGTCCATTAAAAAACCCAGTAAGCTCAATGCAGTAGTGGAGACTGAGAAGAGCTCGAAGAAAAACATGGATGGGAAGGCAAACCAGCCGCAACCCAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103046-'4-6,'4-4,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.392 A=0.172 C2=0.759
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=PU(38.5=3.5)
A:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
C2:
PF134651=zf-H2C2_2=PD(57.7=2.8),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTACACCACCATCAGTCAG
R:
CCAGGTAGCTGCAGTTATCGC
Band lengths:
178-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]