GgaEX1048923 @ galGal4
Exon Skipping
Gene
ENSGALG00000011390 | REST
Description
RE1-silencing transcription factor [Source:HGNC Symbol;Acc:HGNC:9966]
Coordinates
chr4:48626470-48637170:-
Coord C1 exon
chr4:48636270-48637170
Coord A exon
chr4:48632597-48632680
Coord C2 exon
chr4:48626470-48628166
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTTTGATTTTGTTTTCACAGGAG
3' ss Score
8.18
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
CAAAGATGTCCCGTTGGAAGCTCCGGGAACTCCGGAAAGCTCCGAGGACAAGTGCAAGAGCCTCAAGAACAAACCTTTCCGCTGCAAGCCCTGCCATTACGAGGCCGAGTCTGAAGAGGAATTTGTGCACCACATCAGGGTTCACAGTGCTAAGAAGTTTTTCGTGGAAGAAAACGCGGAGAAACAAGTGCAGGTCAAGGAGTCGGATTCCTACAGCGCGGAAGAGGTGGACTTCTCCAAGGGCCCGATCCGCTGCGATCGCTGTGGCTATAACACTAACAGATATGATCACTACCTGGCTCACCTGAAGCACCACAACAAGGCGGGAGAAAATGAGAGAGTGTACAAGTGTACCATATGCACTTACACCACCGTCAGCGAGTATCACTGGAAGAAGCACCTGAGAAACCATTTTCCCAGGAAAGTATACACCTGCTCGCAGTGCTCCTATTTTTCAGACAGGAAAAACAACTATATTCAGCATATTAGAACTCACACGG
Seq A exon
GAGAGCGACCCTATCAATGTGCTATGTGTCCCTATTCCAGCTCTCAGAAGACCCATTTAACCAGGCACATGCGCACCCACTCAG
Seq C2 exon
GTGAGAAGCCATTCAAATGTGATCAGTGCAGTTACGTGGCCTCAAACCAGCATGAAGTAACTCGTCATGCAAGGCAAGTTCACAATGGGCCGAAGCCTCTGACTTGCCCGCACTGTGACTACAAAACAGCCGATCGCAGCAATTTCAAAAAGCACGTTGAGCTCCACGTCAATCCGCGCCAGTTCCTTTGTCCTGTTTGTGACTACGCGGCATCTAAGAAGTGTAACCTGCAGTATCACATCAAATCCAGGCATCCCGATTGTTCGGACATCACCATGGATGTTTCAAAGGTGAAGCTACGGACTAAAAAGAGCGAAGCTGACTTTTCCGAGAGCATCAGTGACAAAGTGGAGAAAGAGCAAACAAAAGGGGATTCGCCCACAAAGAAAACTGAGAAAACTGTGAAAGTGGAGAAAAAAGAGAACTTGGCAAAGGAAAAGAAGCCAACGAGCAATGTTCCTGCACGTCAGGTTACGACCAGAAGTCGGAAATCGACTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011390_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.336 A=0.069 C2=0.765
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=PU(38.5=3.3)
A:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
C2:
PF134651=zf-H2C2_2=PD(57.7=2.7),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF121713=zf-C2H2_jaz=WD(100=3.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACACCACCGTCAGCGAGTAT
R:
GCCACGTAACTGCACTGATCA
Band lengths:
176-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]