RnoEX0075205 @ rn6
Exon Skipping
Gene
ENSRNOG00000002074 | Rest
Description
RE1-silencing transcription factor [Source:RGD Symbol;Acc:621069]
Coordinates
chr14:33134511-33150517:-
Coord C1 exon
chr14:33149615-33150517
Coord A exon
chr14:33143365-33143448
Coord C2 exon
chr14:33134511-33137684
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTGTCATTATAATTTTGCAGGAG
3' ss Score
8.43
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GTACAGCTCGAATAAAGATCCCGCCCCTGAAGCACCCGTGGCGGAGGACAAATGCAAGAATTTGAAGGCCAAACCCTTCCGTTGTAAGCCATGCCAGTATGAAGCGGAGTCTGAAGAACAGTTCGTACATCACATCCGGGTTCACAGTGCTAAGAAGTTTTTTGTGGAAGAGAGTGCAGAGAAGCAAGCCAAAGCCAGGGAATCTGGGGCTTCCCCGTCTGAGGAGGGCGAGTTCTCCAAGGGTCCCATCCGCTGTGATCGCTGTGGCTACAATACCAACCGGTATGATCACTACACGGCACACCTGAAGCACCACCTGAGAGCCGGGGATAACGAGCGTGTCTACAAGTGTATCATTTGCACGTACACGACGGTCAGCGAATACCACTGGCGGAAACACCTGAGGAACCATTTTCCCAGGAAAGTCTACACGTGTAGCAAGTGCAACTATTTTTCCGACAGAAAAAATAATTATGTTCAACACGTTCGAACTCACACAG
Seq A exon
GAGAACGCCCTTATAAATGTGAACTGTGTCCTTACTCAAGTTCTCAGAAGACTCATCTAACTCGACACATGCGTACTCACTCAG
Seq C2 exon
GTGAGAAGCCATTTAAATGTGATCAGTGCAATTATGTGGCCTCTAATCAGCACGAAGTGACCCGACACGCAAGACAGGTTCACAACGGGCCTAAACCTCTTAATTGCCCTCACTGTGACTACAAAACAGCCGATAGGAGCAACTTCAAGAAGCACGTCGAGCTGCACGTCAACCCTCGGCAGTTCAACTGCCCCGTGTGTGACTACGCGGCCTCCAAGAAGTGTAACCTGCAGTACCATTTCAAGTCCAAGCACCCCACCTGCCCCAGCAAGACGATGGACGTGTCCAAAGTGAAGCTGAAGAAAACCAAGAGGAGGGAGGCTGACCTGCACCGTGACGCCGCCGCCGCCGCCACTGAGCAGACGGACACAGAGCAAGCGAAAACCAAGGGGGTGGACGCGTCTGCGAGGAGAAGTGAGAGGCCTGTAAAAGGCGTTGGAAAAGATGTTCCAAAAGAGAAGAAGCCCTGTAGCAATGCCTCTGTGGTGCAGGTAACTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002074-'8-6,'8-3,10-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.329 A=0.184 C2=0.841
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=PU(38.5=3.3)
A:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
C2:
PF134651=zf-H2C2_2=PD(57.7=2.0),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.5),PF121713=zf-C2H2_jaz=WD(100=3.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGTGTAGCAAGTGCAACT
R:
GTTTAGGCCCGTTGTGAACCT
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]